I have specific reasons to have in my game a different load order than the one LOOT proposes. How do I double-check the ordering? The most thorough method is to look for conflicts in TES5Edit and decide for yourself if the load order LOOT gives resolves them to your liking. Using LOOT I'm suspicious that LOOT is ordering plugin X after plugin Y.
I'm running LOOT through Mod Organiser and it's not working.LOOT has warnings starting with "Unable to set stylesheet" and "Failed to find the style sheet in the filesystem" in its LOOTDebugLog.txt.